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Poster Presenters
RECOMB 2007 POSTER PRESENTERS
Session A
Sunday, April 22: 5:30 pm – 7:30 pm
Monday, April 23: 7:30 am – 5:00pm
Gene Identification and Functional Classification of the Hookworm Genome |
Support Vector machine and Clique based Approach for Feature Selection in Protein Profiles |
Linking of Chromosomes During Interphase |
Identification, combination and implementation of linguistic fuzzy rules in acute leukemia using gene expression and covariate data |
Accurate Sequence-Structure Alignment of Multiple RNA Sequences |
Structural information greatly improves the accuracy of protein interactions inferred from homology |
RNA Structure Evolution and Transducer Composition |
Glycosylation Site Prediction Using Machine Learning Approaches |
miRTar: a fast and efficient microRNA target prediction web server |
PTM-X: an Integrated Platform for Identifying Protein Post-Translational Modification Sites |
RNASMotif: A Web Server for Discovering RNA Structural Motif in Unaligned Sequences |
A statistical approach using network structure in the prediction of protein characteristics |
Human X chromosome reveals pronounced early population subdivisions and recent bottlenecks |
Deriving Functional Signatures from Protein Sequences by Iterative Pattern Mining |
Efficient Molecular Dynamics (MD) simulation on Field Programmable Gate Array (FPGA)s with MultiGrid method |
Sequences Conserved by Selection across Mouse and Human Malaria Species |
A Fuzzy Games Approach of RNA-based Gene Regulation |
Maximizing SNP Prediction Accuracy Increases the Power in Association Studies |
Comparing Sequence vs Structure-based Predictions of RNA Binding Sites in Proteins |
Anonymous in-house and public reference sets for copy-number analysis of a small number of Affymetrix SNP arrays |
In vitro and in vivo expression, immunological characterization and invasin-like role of mammalian cell entry (Mce) proteins encoded by mce3 operon of Mycobacterium tuberculosis |
On Criterions of Multiple Alignment Quality |
Prior Knowledge for Discovery Proteomics Data Interpretation |
Cytochrome P450 Structures _ Structural and Phylogenetic analysis |
Informative Positional Priors Improve De Novo Motif Discovery |
A semiparametric mixture model for identifying cis-acting regulatory elements |
Enhancements to the GBrowse Genome Browser |
A new seeding strategy for DNA alignment |
PSLDoc:Protein Subcellular Localization prediction based on Document classification |
Heart Aged-Match between Human Fetus and Mouse Fetus Based on Microarray Gene Expression Profiles |
Inference in Phylogenetic Factorial Hidden Markov Models |
The Isotope Wavelet: A Signal Theoretic Framework for Analyzing Mass Spectrometry Data |
Mining Discriminative Distance Context of Transcription Factor Binding Sites on ChIP enriched Regions |
An Algorithm to Find Co-Regulated Gene Clusters: Adjustment for Random Variability of Gene Expression Data. |
ProSplign-Protein to Genomic Alignment Tool |
Computational Identification of Essential Reactions in Plasmodium falciparum to yield Potential Drug Targets |
Modeling DNA unknotting by type II topoisomerases |
BioCell : A Visualization System for Protein Interactions and Comparmentations |
Systematic Identification Of Cis-Acting Sequences Reveals NF-Y As A Regulator Of Embryonic Stem Cells |
Experimental validation of computationally identified novel transcriptional units in mouse embryonic stem cells |
A Simple Genbank Search Engine |
Membrane-Binding Mechanism of Peripheral Proteins Elucidated by Integration of Bioinformatics Prediction and Molecular Dynamics Simulations |
Statistics of multiple PWM occurrences in biopolymer sequences |
Handling Gaps in Recombination Analysis Using RECCO |
Analysis of systems properties of the Yersinia pestis biovars using a genome-scale constraint based model |
Improved HMMERHEAD for Better Sensitivity |
Branch and Bound Algorithm for Protein Structure Prediction Using Efficient Bounding: Poster Abstract |
A Web Based Polyketide Analysis System for Modular Polyketide Synthases |
WikiPathways: Pathway Editing for the People |
The Fastest Evolving Regions in the Human Genome |
Time-series factor analysis for reconstructing transcription factor activities |
Review and Comparison of Systems Biology Simulation Tools for Translational Research |
A Novel Sliding Window Strategy for Accurate Location of Coding Regions Based on Power Spectrum Analysis |
Homology modeling of human protein cathepsin A |
Pharmacophore Mapping for MCF Cell Inhibition of Arylbenzothiopene Derivatives |
PARRIS: a PARtitioning approach for Robust Inference of Selection |
Prediction of symmetric assemblies by docking |
Identification of Mammalian Housekeeping Genes |
Improving gene correlation estimation by applying filters for low-variability genes |
Maximum Likelihood Quantization and Logical Networks for Modeling Biological Interactions |
Fast-FIND Sequence Similarity Search: An Improved Approach for siRNA Design |
Classifying differentially methylated genes in breast cancer cell lines using the reversible jump Markov Chain Monte Carlo method |
Recognition of protein folds using amino acid occurrence |
Nonmetric distances for Barcode of Life |
Tools for Simulating and Analyzing RNA Folding Kinetics |
Nonrandom dispersal of functionally related genes in eukaryotic genomes: Arabidopsis and mouse |
SAGA: Subgraph Matching Tool for Biological Graphs |
Statistical Features of the Residue Environment in Proteins |
The NET-HMM: a HMM Based Likelihood Model for Evolutionary Networks |
Joint analysis of genetic and physical interactions in yeast reveals pathway redundancy and protein essentiality |
Gene expression analyses in the parasite Schistosoma mansoni using oligonucleotide microarrays |
Supervised multivariate analysis of sequence groups to identify specificity determining residues |
A Genome-Wide Study of Gene Duplication and Loss Histories |
Reconstructing Regulatory Networks from Expression Data using Stochastic Logical Networks |
A novel query-profile alignment algorithm for homology modeling |
PIPA: A Pipeline for High-Throughput Protein Function Annotation |
Finding indels in resequencing |
Gene Selection Using a New Error Bound for Support Vector Machines |
Reconstruction of pathways for instracellular receptor signaling |
The Role
of Long-Range Interaction in Protein Secondary Structure |
Session B
Tuesday, April 24: 3:30 pm – 5:30 pm
Wednesday, April 25: 7:30 am – 3:00pm
Metabolic Network and Gene Duplications in Neurospora Crassa |
Prediction of Bound MHC-peptide Conformations |
Spectral Clustering based Subsequence Feature Map for Protein Classification |
Modification-tolerant Shotgun Protein Sequencing of a Snake Venom Proteome |
Accurate Elimination of False Protein-Protein Interactions |
Genome-wide Binding Site Map of Mammalian Transcription Factors Reveals Rapid Turnover |
Peptide Identification Through The Distribution of Fragmentation Events During Mass Spectrometry |
Meta-Analysis of Gene Expression during Neural Progenitor Cell Differentiation |
A Method to Detect Differential Gene Expression in Cross-species Hybridization Experiments |
Function prediction of an interacting protein pair using domain fusion analysis: SpaR and SpaK |
Combining Heterogeneous Data and Network Motifs for Filling Missing Enzymes in Yeast Metabolic Pathways |
False Discovery Control for Genetic Dissection of Transcriptional Regulation |
Prediction of DNA-binding Regions by Detecting Intra-molecular Interactions with Pattern Mining |
Prediction for Tissue Specific Gene and Gene Regulatory Network in Mouse Embryonic Stem Cell |
Cache-oblivious String Algorithms for Bioinformatics |
The Combination Pattern Extraction of Regulatory Motif by Using the Longest Common Prefix |
MouseFunc: A Competition for Mouse Gene Function Prediction |
A novel mitochondrial inner membrane protein `Miticulon` controls cristae morphology. |
Designing C2H2 Zinc Finger Proteins to Target Specific Sites in Genomic DNA |
Computational Prediction of Host-Pathogen Protein Interactions |
FDR Controlled Topological Core of the Transcriptional Regulatory Network of Saccharomyces cerevisiae |
A new approach for inferring regulatory networks from literature and gene expression measurements |
A Probabilistic Approach to the Design of Structural Selectivity of Proteins |
Combinatorial Principles of Feedback Control in Biochemical Networks |
Ion-Pair in Non-Redundant Protein Structures |
PROCTOR: An algorithm for reconstructing the internal interaction topology of protein complexes |
Systematic Study of the Evolution and Function of Human Regulatory Non-coding Sequences |
SHOE: A Promoter Analysis Tool |
The Compute Portal Project |
Protein Function Prediction Using Motifs, Sequence Features, Alignment Scores |
Reverse engineering gene regulatory networks with Bayesian networks from expression data combined with multiple sources of biological prior knowledge |
Dendroscope: An interactive viewer for large phylogenetic trees |
Comparative Analysis of Metabolic Networks using Gene Expression Data |
Validation of a Novel Empirical Bayes Method for SNP Calling on Arrays |
XpressVista: Expression Analysis and Visualization Tool |
Regression-based Clustering of Short-Time Course Gene Expression Datasets |
PAMES: Pathway Mapping and Editing System |
Reconstructing phenotypical hierarchies: a linear programming approach |
Inferring Dynamic Signalling Networks from Steady State Measurements |
Incorporating Phylogenetic Conservation to Detect Motifs that Correlate with Expression |
An Improved Algorithm for Error Correction of Reads in DNA Fragment Assembly |
MAMUPipe: A Computational Pipeline for Identifying Novel SNP/SIDP in Rhesus Macaques Based on 454 Pyrosequencing Technology |
Structural alignment from sequence alone by integration of predicted secondary structure |
Boosting the Prediction and Understanding of DNA-Binding Proteins |
Functional Enrichment Across Organism Massomes |
Kernel filtering by Orthogonal-PLS and application to the general core promoter recognition problem |
Classifying Families of Multi-Protein Systems Using Phylogenomic Profiling and Hidden Markov Models |
Gene Expression Network Analysis, and Applications to Immunology |
Efficient algorithms to monitor bioinformatics data |
Modeling position dependencies in transcription factor binding site prediction |
Connecting Quantitative Regulatory-Network Models to the Genome |
GenMAPP for Pathway Analysis: Current and Future Development |
Inferring ancestral states of a protein interaction network |
Assessment of Protein Domain Classifications: SCOP, CATH, Dali and EVEREST |
Refining Multiple Sequence Alignments with Conserved Core Regions. |
Systematic Study of Numerical Solvers for Complex Oscillatory Biochemical System Models |
Knowledge-based atomic solvation potentials for analysis of protein structure stability and protein interaction |
Towards predicting composition and order of non-ribosomal peptides |
A Hybrid SVM / DBN Approach to Detecting SNPs in Diploid DNA Samples |
Quantifying the Relative Positions of Proteins Secondary Structure Elements |
Structure-based Prediction of Clinical Phenotypes in Lysosomal Storage Diseases |
Combining Statistical Alignment and Phylogenetic Footprinting to Detect Conserved Regulatory Elements |
Antagonistic regulation allows controlled access to multistability in neuroadaptivity |
Leveraging Sequence and Structure to Evaluate Misannotation |
Image Alignment of Heterogeneous Macromolecules from Electron Microscopy |
A combinatorial approach to kinship analysis using microsatellite data |
A Bayesian Approach for Evaluating the Metabolic Pathways Predicted by PathoLogic |
Benign SNPs are over-represented near oligomeric interfaces in human aquaporins |
Pharmacophore Detection by Multiple Flexible Alignment of Drug-Like Molecules Pharmacophore Detection by Multiple Flexible Alignment of Drug-Like Molecules |
The maintenance of sex in bacteria is ensured by its potential to reload genes |
Gene expression profile analysis for circadian promoter activities of cyanobacterial bioluminescent reporter strains using non-metric multidimensional scaling |
Gene arrangement for cell division cycle microarray experiments without sinusoidal fittings |
Robustness and modular design of the Drosophila segment polarity network |
Kinetics Analysis Methods For Approximate Folding Landscapes |
Distinguishing Folding Behavior using Rigidity |
Decoding Multiple Feedback Loops in Biological Networks |
The role of the Translation Attenuation pathway in Unfolded Protein Response |
Identification of Functional Modules using Network Topology and High-throughput Data |
A new method for monoisotopic mass determination |
Detection of functional associations in gene expression data by mining co-regulated gene profiles |
Estimating Genome-wide Copy Number using Allele Specific Mixture Models |
PMRF: a Pathway-based Markov Random Field Model for Analysis of Genomic Data |
Search for the `right` model for mitosis |
Modeling and Identification of Transcription Factor Binding Sites Using Higher Order Position Weight Matrices |
Comparative Genomic
Study of the Evolution of Cis-regulatory Elements in Recent Duplicated
Genes from S. Cerevisiae |
Stochastic Modeling of Yeast Cell Cycle Network using Markov Chains |
Between order and disorder in protein structures - analysis of "dual personality" fragments |
Ultra-Fast Local Structural Comparison with Writhe Decomposition |
Reconstructing Condition-Specific Signal Transduction Hierarchy using Bayesian Networks |
Gene mining for conserved cis elements in model genomes using gene expression patterns |