|
PROGRAM INFORMATION
|

|
The conference proceedings for RECOMB
2007 is published by Springer, in the series Lecture
Notes in Bioinformatics. |
|
|
|
RECOMB 2007 Agenda at a
Glance
Saturday, April 21, 2007
|
8:30am-5:30pm |
Optional Tours |
12:30-6:30 |
Affymetrix Low Level Analysis Workshop 2007
Sponsored by the Affymetrix
Developers' Network |
|
2:00pm-7:00pm |
Registration |
|
6:30pm-8:30pm |
Welcome Reception |
Sunday, April 22, 2007
|
7:30am-8:30am |
Continental Breakfast |
|
7:30am-5:30pm |
Registration Open |
|
8:30am-8:45am |
Conference Welcome |
8:45am-9:10am
|
QNet: A Tool for Querying Protein Interaction
Networks
Authors: Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet
Bafna, Roded Sharan
|
9:10am-9:35am |
Pairwise Global Alignment of Protein Interaction
Networks By Matching Neighborhood Topology
Authors: Rohit Singh, Jinbo Xu, Bonnie Berger
|
9:35am-10:00am |
Reconstructing the Topology of Protein Complexes
Authors: Allister Bernard, David Vaughn, Alexander J. Hartemink |
10:00am-10:25am |
Network Legos: Building Blocks of Cellular Wiring
Diagrams
Authors: T. M. Murali, Corban G. Rivera |
10:25am-10:50am
|
Break |
10:50am-11:15am
|
An Efficient Method for Dynamic
Analysis of Gene Regulatory Networks and in-silico Gene Perturbation
Experiments
Authors: Abhishek Garg, Ioannis Xenarios, Luis Mendoza, Giovanni
DeMicheli
|
11:15am-11:40am |
A Feature-Based Approach to Modeling
Protein-DNA Interactions
Authors: Eilon Sharon, Eran Segal |
11:40pm-12:35pm
|
Elizabeth
Blackburn |
12:35pm-2:00pm
|
Lunch |
2:00pm-2:55pm
|
Pat
Brown |
12:30pm-7:30pm
|
Exhibits Open |
2:55pm-3:20pm
|
Network Motif Discovery Using Subgraph Enumeration
and Symmetry- Breaking
Authors: Joshua A. Grochow, Manolis Kellis |
3:20pm-3:45pm |
Nucleosome Occupancy Information Improves de
novo Motif Discovery
Authors: Alexander J Hartemink, Raluca Gordan, Leelavati Narlikar |
3:45pm-4:10pm
|
Break |
4:10pm-4:35pm
|
Framework for Identifying Common
Aberrations in DNA Copy Number Data
Authors: Amir Ben-Dor, Doron Lipson, Anya Tsalenko, Mark Reimers,
Lars O. Baumbusch, Michael M. Barrett, John N. Weinstein, Anne-Lise
Borresen-Dale, Zohar Yakhini
|
4:35pm-5:00pm |
Estimating Genome-wide Copy Number
using Allele Specific Mixture Models
Authors: Wenyi Wang, Benilton Carvalho, Aravinda Chakravarti, Rafael
A. Irizarry
|
5:00pm-5:25pm |
GIMscan: A New Statistical Method
for Analyzing Whole-Genome Array CGH Data
Authors: Yanxin Shi, Fan Guo, Wei Wu, Eric P. Xing |
5:30pm-7:30pm
|
Poster Session A |
Monday, April 23, 2007
|
7:30am-8:30am
|
Continental Breakfast |
|
7:30am-7:00pm
|
Poster Session A Continued |
|
8:30am-9:25am
|
Abby
Dernburg |
9:25am-9:50am
|
Production-Passage-Time Approximation:
A New Approximation Method to Accelerate the Simulation Process
of Enzymatic Reactions
Authors: Hiroyuki Kuwahara, Chris J. Myers
|
9:50am-10:15am |
Shift Invariant Adaptive Double
Threading: Learning MHC II - peptide binding
Authors: Noah Aaron Zaitlen, Manuel Reyes-Gomez, David Heckerman,
Nebojsa Jojic |
10:00am-5:30pm
|
Exhibits Open |
10:15am-10:40am
|
Break |
10:40am-11:05am
|
Reconstructing the Phylogeny of
Mobile Elements
Authors: Sean O'Rourke, Noah Zaitlen, Nebojsa Jojic, Eleazar Eskin
|
11:05am-11:30am |
Beyond Galled Trees - Decomposition
and Computation of Galled Networks
Authors: Daniel H Huson, Tobias H Kloepper |
11:30am-11:55am |
Variational Upper Bounds for Probabilistic
Phylogenetic Models
Authors: Ydo Wexler, Dan Geiger |
11:55am-12:20pm |
Heuristics for the Gene-duplication
Problem: An $\Omega(n)$ Speed-up for the Local Search
Authors: Mukul Subodh Bansal, Oliver Eulenstein, AndrÈ Wehe,
Gordon Burleigh |
12:20pm-2:00pm
|
Lunch |
12:30-2:00 |
Birds of a Feather
Discussion: Algorithms for next-generation sequencing applications |
2:00pm-2:55pm
|
Jay
Keasling |
2:55pm-3:20pm
|
Support Vector Training of Protein
Alignment Models
Authors: Chun-Nam John Yu, Thorsten Joachims, Ron Elber, Jarek Pillardy
|
3:20pm-3:45pm |
Tools for Simulating and Analyzing
RNA Folding Kinetics
Authors: Xinyu Tang, Shawna Thomas, Nancy M. Amato |
3:45pm-4:10pm |
Multiple Sequence Alignment Based
on Profile Alignment of Intermediate Sequences
Authors: Yue Lu, Sing-Hoi Sze |
4:10pm-4:35pm
|
Break |
4:35pm-5:00pm
|
Connectedness Profiles in Protein
Networks for the Analysis of Gene Expression Data
Authors: Joel R Pradines, Vlado Dancik, Alan Ruttenberg, Victor
Farutin
|
5:00pm-5:25pm |
Multivariate Segmentation in the
Analysis of Transcription Tiling Array Data
Authors: Antonio Piccolboni |
5:25pm-5:50pm |
A Bayesian Model that Links Microarray
mRNA Measurements to Mass Spectrometry Protein Measurements
Authors: Anitha Kannan, Andrew Emili, Brendan J Frey |
6:00pm-7:00pm |
RECOMB Business Meeting
|
Tuesday, April 24, 2007
|
7:30am-8:30am
|
Continental Breakfast |
8:30am-9:25am
|
Jennifer
Graves |
|
9:25am-9:50am
|
Rearrangements in Genomes with Centromeres —
Part I: Translocations
Authors: Michal Ozery-Flato, Ron Shamir
|
9:50am-10:15am |
Identification of Deletion Polymorphisms from
Haplotypes
Authors: Erik Corona, Benjamin Raphael, Eleazar Eskin |
|
10:00am-5:00pm
|
Exhibits Open |
10:15am-10:40am
|
Break |
10:40am-11:05am
|
Free Energy Estimates of All-atom Protein Structures
Using Generalized Belief Propagation
Authors: Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead
|
11:05am-11:30am |
Minimizing and Learning Energy Functions for
Side-Chain Prediction
Authors: Chen Yanover, Ora Schueler-Furman, Yair Weiss |
11:30am-11:55am |
Protein Conformational Flexibility Analysis with
Noisy Data
Authors: Anshul Nigham, David Hsu |
11:55am-12:20pm |
Deterministic Pharmacophore Detection via Multiple
Flexible Alignment of Drug-Like Molecules
Authors: Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth
Nussinov, Haim J. Wolfson |
12:20pm-2:00pm
|
Lunch |
2:00pm-2:55pm
|
Harry
Noller |
2:55pm-3:20pm |
Design of Compact, Universal DNA Microarrays
for Protein Binding Microarray Experiments
Authors: Anthony A. Philippakis, Aaron M. Qureshi, Michael F. Berger,
Martha L. Bulyk
|
3:30pm-5:30pm |
Poster Session B |
6:30-8:30pm |
Reception |
Wednesday, April 25, 2007
|
7:30am-8:30am
|
Continental Breakfast |
8:30am-9:25pm
|
Yishi
Jin |
7:30am-3:00pm |
Poster Session B Continued |
7:30am-3:00pm |
Exhibits Open |
|
9:25am-9:50am
|
Improved Ranking Functions for Protein and Modification-Site
Identifications
Authors: Marshall Bern, David Goldberg
|
9:50am-10:15am |
Peptide Retention-Time Prediction Yields Improved
Tandem Mass Spectrum Identification for Diverse Chromatography Conditions
Authors: Aaron A. Klammer, Xianhua Yi, Michael J. MacCoss, William
Stafford Noble |
10:15am-10:40am |
A Fast and Accurate Algorithm for the Quantification
of Peptides from Mass Spectrometry Data
Authors: Ole Schulz-Trieglaff, Rene Hussong, Clemens Groepl, Andreas
Hildebrandt, Knut Reinert |
|
10:40am-11:05am
|
Break |
11:05am-11:30am
|
Association Mapping of Complex Diseases with
Ancestral Recombination Graphs: Models and Efficient Algorithms
Authors: Yufeng Wu
|
11:30am-11:55am |
An Efficient and Accurate Graph-based Approach
to Detect
Population Substructure
Authors: Srinath Sridhar, Satish Rao, Eran Halperin |
11:55am-12:20pm |
RB-Finder: An Improved Distance-based Sliding
Window Method to Detect Recombination Breakpoints
Authors: Wah Heng Lee, Wing Kin Sung |
12:20pm-1:30pm
|
Lunch |
1:30pm-2:25pm
|
Aviv
Regev |
2:25pm-2:50pm
|
Comparative Analysis of Spatial Patterns of
Gene Expression in Drosophila melanogaster Imaginal Discs
Authors: Cyrus L. Harmon, Parvez Ahammad, Ann Hammonds, Richard
Weiszmann, Susan E. Celniker, S. Shankar Sastry, Gerald M. Rubin
|
2:50pm-3:30pm
|
Awards Ceremony |
3:30pm
|
Adjourn
|
|